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FlowMap
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FlowMap
  • Introduction
    • RNA Velocity Geometry
    • Curvature Analysis
  • Installation
  • Tutorials
    • How to Perform FlowMap Embedding
    • How to Evaluate the Consistency of the Velocity Embedding
    • How to Perform Trajectory and Gene Gradient Field Analysis
    • How to Perform Curvature Analysis
  • API Reference
    • FlowMap Module
    • flowmap.core Module
    • flowmap.geometry Module
    • flowmap.plot Module
    • flowmap.evaluation Module
    • flowmap.utils Module
    • flowmap.utils.dataset Module
    • flowmap.utils.io Module
  • References
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Tutorials¶

Larry tutorial data¶

The Larry geometry and curvature tutorials use a processed FlowMap tutorial object. Download it from Figshare and place it at tutorial/larry_flowmap_data.joblib before running those notebooks:

Larry Data Processed with FlowMap

  • How to Perform FlowMap Embedding
  • How to Evaluate the Consistency of the Velocity Embedding
  • How to Perform Trajectory and Gene Gradient Field Analysis
  • How to Perform Curvature Analysis
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How to Perform FlowMap Embedding
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  • Tutorials
    • Larry tutorial data